Dr Fu, Zhiyan - Profile

UserID: 8319
Email: fuzy@gis.a-star.edu.sg
Organization: Genome Institute of Singapore (GIS), A*STAR
Department : Scientific and Research Computing
URL : y_foote@yahoo.com
My Page
Keywords :
Big Data Mining
Bioinformatics
Biostatistics
Genomic data analysis
HPC
Machine Learning
Microarray
Next generation sequence
Research Computing
Statistics Modelling
Computational Biology

Last Login Date : 28/11/2017 11:19:23
Last Updated Date : 28/11/2017 11:26:59

Summary :
Research Area : Bioinformatics / Medical Informatics
Biostatistics
Data Mining
High Performance Computing
Information Technology
Other: Machine Learning; Big Data
Education :
PhD 2007 Mount Sinai School of Medicine of New York Univers United States
Scientific Appointment :
Chief Scientific Computing Officer -Current Genome Institute of Singapore Singapore
Director of Bioinformatics Facility 2009-2011 The Wistar Institute United States
Singapore Based Committee:
Enterprise Risk Management (ERM) Committee 2014-2016 Genome Institute of Singapore Singapore
Workplace Safety and Health Committee 2013-2016 Genome Institute of Singapore Singapore
National Diabetes Database Working Committee 2017-Current Ministry of Health Singapore
National Precision Medicine Enabling Platform Workgroup 2017-Current Ministry of Health Singapore

Employment History

Designation Duration Organization Country
Director of Bioinformatics Facility 2009-2011 The Wistar Institute United States
Research Scientist 2007-2009 Signal Patterns Inc. United States

Publications

Author Title Journal Year Vol: Page
Zhiyan Fu, Jing Lin An Overview of Bioinformatics Tools and Resources in Allergy Food Allergens: Methods and Protocols 2017 223-245
Ruenn Chai Lai, Soon Sim Tan, Ronne Wee Yeh Yeo, Andre Boon Hwa Choo, Agnes T Reiner, Yan Su, Yang Shen, Zhiyan Fu, Lezhava Alexander, Siu Kwan Sze, Sai Kiang Lim MSC secretes at least 3 EV types each with a unique permutation of membrane lipid, protein and RNA Journal of extracellular vesicles 2016 5:29828
Jong Ghut Ashley Aw, Yang Shen, Andreas Wilm, Miao Sun, Xin Ni Lim, Kum-Loong Boon, Sidika Tapsin, Yun-Shen Chan, Cheng-Peow Tan, Adelene Y.L., Sim, Tong Zhang, Teodorus Theo Susanto, Zhiyan Fu, Niranjan Nagarajan, Yue Wan In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation MOL CELL 2016 62(4): 603-617
Zhiyan Fu, Jing Lin Chapter 1: Applying Supervised Machine Learning in Bioinformatics Analysis Horizons in Computer Science Research 2015 Volume 12
Brian P. Vickery, Jing Lin, Michael Kulis, Zhiyan Fu, Pamela H. Steele, Stacie M. Jones, Amy M. Scurlock, Gustavo Gimenez, Ludmilla Bardina, Hugh A. Sampson, A. Wesley Burks Peanut oral immunotherapy modifies IgE and IgG4 responses to major peanut allergens J ALLERGY CLIN IMMUN 2013 131(1):128-134
Jing Lin, Francesca M Bruni, Zhiyan Fu, Jennifer Maloney, Ludmilla Bardina, Attilio L Boner, Gustavo Gimenez, Hugh A Sampson A bioinformatics approach to identify patients with symptomatic peanut allergy using peptide microarray immunoassay J ALLERGY CLIN IMMUN 2012 129(5):1321-1328
Gustavo Gimenez, Jean-Christoph Caubet, S. Leonard, Jing Lin, Zhiyan Fu, Ludmilla Bardina, Hugh A Sampson, Anna Nowak-Wegrzyn Ovalbumin and Ovomucoid IgE/IgG4 Epitopes in Patients Ingesting Baked Egg Products by Peptide Microarray Immunoassay. J ALLERGY CLIN IMMUN 2012 129(2): AB22
Rosalia Ayuso, Silvia Sánchez-Garcia, M Pascal, Jing Lin, G Grishina, Zhiyan Fu, Maria Dolores Ibáñez, Joaquin Sastre, Hugh A. Sampson Is epitope recognition of shrimp allergens useful to predict clinical reactivity? CLIN EXP ALLERGY 2012 42(2):293-304
A. Kathleen McClendon, Jeffry L. Dean, Adam Ertel, Zhiyan Fu, Dayana B. Rivadeneira, Christopher A. Reed, Ryan J. Bourgo, Agnieszka Witkiewicz, Sankar Addya, Christopher N. Mayhew, H. Leighton Grimes, Paolo Fortina, Erik S. Knudsen RB and p53 cooperate to prevent liver tumorigenesis in response to tissue damage GASTROENTEROLOGY 2011 141(4): 1439-1450
Jing Lin, Francesca M Bruni, Zhiyan Fu, Jennifer Maloney, Ludmilla Bardina, Gustavo Gimenez, Attilio L Boner, Hugh A Sampson IgE and IgG4 epitope mapping by peptide microarray immunoassay for the identification of patients with symptomatic peanut allergy J ALLERGY CLIN IMMUN 2011 127(2): AB179
Rosalia Ayuso, Silvia Sánchez-Garcia, Jing Lin, Zhiyan Fu, Maria Dolores Ibáñez, Teresa Carrillo, Carlos Blanco, Marina Goldis, Ludmila Bardina, Joaquin Sastre, Hugh A. Sampson Greater epitope recognition of shrimp allergens by children than adults suggests that shrimp sensitization decreases with age J ALLERGY CLIN IMMUN 2010 125(6):1286-1293
Hideki Tanizawa, Osamu Iwasaki, Atsunari Tanaka, Joseph R. Capizzi, Priyankara Wickramasinghe, Mihee Lee, Zhiyan Fu, Ken-ichi Noma Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation NUCLEIC ACIDS RES 2010 38(22): 8164-8177
Jing Lin, Ludmilla Bardina, Zhiyan Fu, Marina Goldis, Hugh Sampson Validation and upgrading of a sensitive peptide microarray system for large-scale epitope mapping J ALLERGY CLIN IMMUN 2009 123 (2), S178
Jing Lin, Ludmilla Bardina, Wayne G. Shreffler, Doerthe A. Andreae, Yongchao Ge, Julie Wang, Francesca M. Bruni, Zhiyan Fu, Youngshin Han, Hugh A. Sampson Development of a novel peptide microarray for large scale epitope mapping of food allergens J ALLERGY CLIN IMMUN 2009 124(2): 315-22
Zhiyan Fu Post-structural genomics: correlate protein sequence, structure and function ProQuest 2008  
Ning Zhang, Bin Xu, Chunyan Mou, Wenli Yang, Jianwen Wei, Liang Lu, Junjie Zhu, Jingchun Du, Xiaokun Wu, Lanting Ye, Zhiyan Fu, Yang Lu, Jianghai Lin, Zizi Sun, Jing Su, Meiling Dong, Anlong Xu Molecular profile of the unique species of traditional Chinese medicine, Chinese seahorse (Hippocampus kuda Bleeker) FEBS LETT 2003 550: 124-134
Yanzhen Yang, Shujian Cun, Xiaojin Xie, Jianghai Lin, Jianwen Wei, Wenli Yang, Chunyan Mou, Cuiling Yu, Lanting Ye, Yang Lu, Zhiyan Fu, Anlong Xu EST analysis of gene expression in the tentacle of Cyanea capillata FEBS LETT 2003 538: 183-191
Chungyan Mou, Shicui Zhang, Jianghai Lin, Wenli Yang, Wenyan Wu, Jianwen Wei, Xiaokun Wu, Jingchun Du, Zhiyan Fu, Lanting Ye, Yang Lu, Xiaojin Xie, Yiliang Wang, Anlong Xu EST Analysis of mRNAs Expressed in Neurula of Chinese Amphioxus BIOCHEM BIOPH RES CO 2002 299(1): 74-84

Prizes/Awards

Description Year Organization/Country
(PI) IAF111159: A Scalable Platform for Next Generation Sequencing Analysis 2014 Hitachi and A*STAR/ Singapore
(PI) IAF111134: A Cloud Based NGS Environment 2014 British Telecom Ltd. and A*STAR/ Singapore

Grant

Project Title
A Cloud Based NGS Environment
A Scalable Platform for Next Generation Sequencing Analysis